Modeling oscillations and spiral waves in Dictyostelium populations

Javad Noorbakhsh, David J. Schwab, Allyson E. Sgro, Thomas Gregor, and Pankaj Mehta
Phys. Rev. E 91, 062711 – Published 15 June 2015
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Abstract

Unicellular organisms exhibit elaborate collective behaviors in response to environmental cues. These behaviors are controlled by complex biochemical networks within individual cells and coordinated through cell-to-cell communication. Describing these behaviors requires new mathematical models that can bridge scales—from biochemical networks within individual cells to spatially structured cellular populations. Here we present a family of “multiscale” models for the emergence of spiral waves in the social amoeba Dictyostelium discoideum. Our models exploit new experimental advances that allow for the direct measurement and manipulation of the small signaling molecule cyclic adenosine monophosphate (cAMP) used by Dictyostelium cells to coordinate behavior in cellular populations. Inspired by recent experiments, we model the Dictyostelium signaling network as an excitable system coupled to various preprocessing modules. We use this family of models to study spatially unstructured populations of “fixed” cells by constructing phase diagrams that relate the properties of population-level oscillations to parameters in the underlying biochemical network. We then briefly discuss an extension of our model that includes spatial structure and show how this naturally gives rise to spiral waves. Our models exhibit a wide range of novel phenomena. including a density-dependent frequency change, bistability, and dynamic death due to slow cAMP dynamics. Our modeling approach provides a powerful tool for bridging scales in modeling of Dictyostelium populations.

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  • Received 15 October 2014

DOI:https://doi.org/10.1103/PhysRevE.91.062711

©2015 American Physical Society

Authors & Affiliations

Javad Noorbakhsh1, David J. Schwab2,3,*, Allyson E. Sgro2,3, Thomas Gregor2,3, and Pankaj Mehta1,†

  • 1Physics Department, Boston University, Boston, Massachusetts, USA
  • 2Joseph Henry Laboratories of Physics, Princeton University, Princeton, New Jersey, USA
  • 3Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, USA

  • *Present address: The Department of Physics and Astronomy, Northwestern University, Evanston, Illinois, USA.
  • pankajm@bu.edu

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Issue

Vol. 91, Iss. 6 — June 2015

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