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Periodic Motion of Sedimenting Flexible Knots

Magdalena Gruziel, Krishnan Thyagarajan, Giovanni Dietler, Andrzej Stasiak, Maria L. Ekiel-Jeżewska, and Piotr Szymczak
Phys. Rev. Lett. 121, 127801 – Published 18 September 2018
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Abstract

We study the dynamics of knotted deformable closed chains sedimenting in a viscous fluid. We show experimentally that trefoil and other torus knots often attain a remarkably regular horizontal toroidal structure while sedimenting, with a number of intertwined loops, oscillating periodically around each other. We then recover this motion numerically and find out that it is accompanied by a very slow rotation around the vertical symmetry axis. We analyze the dependence of the characteristic timescales on the chain flexibility and aspect ratio. It is observed in the experiments that this oscillating mode of the dynamics can spontaneously form even when starting from a qualitatively different initial configuration. In numerical simulations, the oscillating modes are usually present as transients or final stages of the evolution, depending on chain aspect ratio and flexibility, and the number of loops.

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  • Received 6 December 2017
  • Revised 18 April 2018

DOI:https://doi.org/10.1103/PhysRevLett.121.127801

© 2018 American Physical Society

Physics Subject Headings (PhySH)

Fluid Dynamics

Synopsis

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Knotted Loops Fall Flat

Published 18 September 2018

A knotted loop of metal beads—mimicking a knotted molecule—organizes into a flat horizontal ring when drifting down through a viscous fluid.

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Authors & Affiliations

Magdalena Gruziel1, Krishnan Thyagarajan2, Giovanni Dietler2, Andrzej Stasiak3,4, Maria L. Ekiel-Jeżewska1,*, and Piotr Szymczak5,†

  • 1Institute of Fundamental Technological Research, Polish Academy of Sciences, Pawińskiego 5B, 02-106 Warsaw, Poland
  • 2Institute of Physics, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland
  • 3Center for Integrative Genomics, University of Lausanne, CH-1015 Lausanne, Switzerland
  • 4SIB Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland
  • 5Institute of Theoretical Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland

  • *mekiel@ippt.pan.pl
  • piotr.szymczak@fuw.edu.pl

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Issue

Vol. 121, Iss. 12 — 21 September 2018

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