Interplay of nonlinearity and geometry in a DNA-related, Klein-Gordon model with long-range dipole-dipole interaction

J. F. R. Archilla, P. L. Christiansen, and Yu. B. Gaididei
Phys. Rev. E 65, 016609 – Published 21 December 2001
PDFExport Citation

Abstract

Most of the studies on mathematical models of DNA are limited to next neighbor interaction. However, the coupling between base pairs is thought to be caused by dipole interaction, and, when the DNA strand is bent, the distances between base pairs become shorter, therefore the interactions with distant base pairs have to be taken into account. In this paper we analyze the existence and stability of breathers, i.e., localized oscillations in a simple model of bent DNA with long-range dipole interaction. Breathers have been suggested as precursors of the denaturation bubble.

  • Received 12 July 2001

DOI:https://doi.org/10.1103/PhysRevE.65.016609

©2001 American Physical Society

Authors & Affiliations

J. F. R. Archilla

  • Department of Applied Physics I, University of Sevilla, Avenida Reina Mercedes s/n, 41012-Sevilla, Spain

P. L. Christiansen

  • Informatics and Mathematical Modelling, The Technical University of Denmark, DK-2800 Lyngby, Denmark

Yu. B. Gaididei

  • Bogolyubov Institute for Theoretical Physics, 03143 Kiev, Ukraine

References (Subscription Required)

Click to Expand
Issue

Vol. 65, Iss. 1 — January 2002

Reuse & Permissions
Access Options
Author publication services for translation and copyediting assistance advertisement

Authorization Required


×
×

Images

×

Sign up to receive regular email alerts from Physical Review E

Log In

Cancel
×

Search


Article Lookup

Paste a citation or DOI

Enter a citation
×