Mapping of mutation-sensitive sites in proteinlike chains

M. Skorobogatiy and G. Tiana
Phys. Rev. E 58, 3572 – Published 1 September 1998
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Abstract

In this work we have studied, with the help of a simple on-lattice model, the distribution pattern of sites sensitive to point mutations (“hot” sites) in proteinlike chains. It has been found that this pattern depends on the regularity of the matrix that rules the interaction between different kinds of residues. If the interaction matrix is dominated by the hydrophobic effect (a Miyazawa-Jernigan–like matrix), this distribution is very simple: All the hot sites can be found at the positions with the maximum number of closest nearest neighbors (bulk). If random or nonlinear corrections are added to such an interaction matrix the distribution pattern changes. The rising of collective effects allows the hot sites to be found in places with a smaller number of nearest neighbors (surface) while the general trend of the hot sites to fall into a bulk part of a conformation still holds.

  • Received 17 March 1998

DOI:https://doi.org/10.1103/PhysRevE.58.3572

©1998 American Physical Society

Authors & Affiliations

M. Skorobogatiy1 and G. Tiana2

  • 1Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
  • 2Department of Physics, Technical University of Denmark, Building 307, 2100 Lyngby, Denmark

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Vol. 58, Iss. 3 — September 1998

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