Stability Threshold as a Selection Principle for Protein Design

Michele Vendruscolo, Amos Maritan, and Jayanth R. Banavar
Phys. Rev. Lett. 78, 3967 – Published 19 May 1997
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Abstract

The sensitivity of the native states of proteinlike heteropolymers to mutations modeled as perturbations in the interaction potential between amino acids is studied. The stability threshold against mutations is shown to be zero for random heteropolymers on a lattice in two dimensions, whereas a design procedure modeling evolution produces a nonzero threshold. We introduce an evolutionlike protein design procedure based on an optimization of the stability threshold that is shown to naturally ensure thermodynamic stability as well.

  • Received 11 October 1996

DOI:https://doi.org/10.1103/PhysRevLett.78.3967

©1997 American Physical Society

Authors & Affiliations

Michele Vendruscolo1, Amos Maritan1, and Jayanth R. Banavar2

  • 1Istituto Nazionale per la Fisica della Materia (I.N.F.M.) and International School for Advanced Studies (S.I.S.S.A.), Via Beirut 2-4, 34014 Trieste, Italy
  • 2Department of Physics and Center for Materials Physics, The Pennsylvania State University, 104 Davey Laboratory, University Park, Pennsylvania 16802

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Vol. 78, Iss. 20 — 19 May 1997

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