• Open Access

Minimizing thermodynamic length to select intermediate states for free-energy calculations and replica-exchange simulations

Daniel K. Shenfeld, Huafeng Xu, Michael P. Eastwood, Ron O. Dror, and David E. Shaw
Phys. Rev. E 80, 046705 – Published 19 October 2009

Abstract

In computational thermodynamics, a sequence of intermediate states is commonly introduced to connect two equilibrium states. We consider two cases where the choice of intermediate states is particularly important: minimizing statistical error in free-energy difference calculations and maximizing average acceptance probabilities in replica-exchange simulations. We derive bounds for these quantities in terms of the thermodynamic distance between the intermediates, and show that in both cases the intermediates should be chosen as equidistant points along a geodesic connecting the end states.

  • Figure
  • Received 1 July 2009
  • Corrected 22 October 2009

DOI:https://doi.org/10.1103/PhysRevE.80.046705

This article is available under the terms of the Creative Commons Attribution 3.0 License. Further distribution of this work must maintain attribution to the author(s) and the published article’s title, journal citation, and DOI.

Corrections

22 October 2009

Erratum

Authors & Affiliations

Daniel K. Shenfeld1, Huafeng Xu1, Michael P. Eastwood1, Ron O. Dror1, and David E. Shaw1,2,*

  • 1D. E. Shaw Research, New York, New York 10036, USA
  • 2Center for Computational Biology and Bioinformatics, Columbia University, New York, New York 10032, USA

  • *Author to whom correspondence should be addressed. David.Shaw@DEShawResearch.com

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Issue

Vol. 80, Iss. 4 — October 2009

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