Sequence-dependent effects on the properties of semiflexible biopolymers

Zicong Zhou and Béla Joós
Phys. Rev. E 77, 061906 – Published 9 June 2008

Abstract

Using a path integral technique, we show exactly that for a semiflexible biopolymer in constant extension ensemble, no matter how long the polymer and how large the external force, the effects of short-range correlations in the sequence-dependent spontaneous curvatures and torsions can be incorporated into a model with well-defined mean spontaneous curvature and torsion as well as a renormalized persistence length. Moreover, for a long biopolymer with large mean persistence length, the sequence-dependent persistence lengths can be replaced by their mean. However, for a short biopolymer or for a biopolymer with small persistence lengths, inhomogeneity in persistence lengths tends to make physical observables very sensitive to details and therefore less predictable.

  • Received 12 December 2007

DOI:https://doi.org/10.1103/PhysRevE.77.061906

©2008 American Physical Society

Authors & Affiliations

Zicong Zhou*

  • Department of Physics and Graduate Institute of Life Sciences, Tamkang University, 151 Ying-chuan, Tamsui 25137, Taiwan, Republic of China

Béla Joós

  • Ottawa Carleton Institute for Physics, University of Ottawa Campus, Ottawa, Ontario, Canada, K1N-6N5

  • *zzhou@mail.tku.edu.tw
  • bjoos@uottawa.ca; URL http://www.science.uottawa.ca/~bjoos

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Issue

Vol. 77, Iss. 6 — June 2008

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