Abstract
An application of the Langevin dynamics algorithm for simulation of protein conformational equilibria at constant is presented. The algorithm is used to compute average protonation of titratable groups in ovomucoid third domain, as functions of resulting in data, basically equivalent to the dependencies of chemical shifts obtained from multidimensional nuclear magnetic resonance (NMR) spectroscopy, for the protein titratable residues. The values obtained from the simulation are in reasonable agreement with experimental data. Possible improvements of this methodology, using achievements from other fields of mesoscopic biomolecular simulations, are also discussed.
- Received 24 May 2002
DOI:https://doi.org/10.1103/PhysRevE.66.051911
©2002 American Physical Society