Zero-temperature properties of RNA secondary structures

Enzo Marinari, Andrea Pagnani, and Federico Ricci-Tersenghi
Phys. Rev. E 65, 041919 – Published 8 April 2002
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Abstract

We analyze different microscopic RNA models at zero temperature. We discuss both the most simple model, which suffers a large degeneracy of the ground state, and models in which the degeneracy has been removed in a more or less severe manner. We calculate low-energy density of states using a coupling perturbing method, where the ground state of a modified Hamiltonian, that repels the original ground state, is determined. We evaluate scaling exponents starting from measurements of overlaps and energy differences. In the case of models without accidental degeneracy of the ground state we are able to clearly establish the existence of a glassy phase with θ1/3. 87.15.Aa, 64.60.Fr

    DOI:https://doi.org/10.1103/PhysRevE.65.041919

    ©2002 American Physical Society

    Authors & Affiliations

    Enzo Marinari*, Andrea Pagnani, and Federico Ricci-Tersenghi

    • Dipartimento di Fisica, SMC and UdR1 of INFM, INFN, Università di Roma “La Sapienza,” Piazzale Aldo Moro 2, I-00185 Rome, Italy

    • *Electronic address: Enzo.Marinari@roma1.infn.it
    • Electronic address: Andrea.Pagnani@roma1.infn.it
    • Electronic address: Federico.Ricci@roma1.infn.it

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    Issue

    Vol. 65, Iss. 4 — April 2002

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