Codon distributions in DNA

A. Som, S. Chattopadhyay, J. Chakrabarti, and D. Bandyopadhyay
Phys. Rev. E 63, 051908 – Published 18 April 2001
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Abstract

The codons, 64 in number, are distributed over the coding parts of DNA sequences. The distribution function is the plot of frequency versus rank of the codons. These distributions are characterized by parameters that are almost universal, i.e., gene independent. There is but a small part that depends on the gene. We present the theory to calculate the universal (gene-independent) part. The part that is gene-specific, however, has undetermined overlaps and fluctuations.

  • Received 9 November 2000

DOI:https://doi.org/10.1103/PhysRevE.63.051908

©2001 American Physical Society

Authors & Affiliations

A. Som1,*, S. Chattopadhyay1,†, J. Chakrabarti1,‡, and D. Bandyopadhyay2,§

  • 1Department of Theoretical Physics, Indian Association for the Cultivation of Science, Calcutta 700 032, India
  • 2Linguistics Research Unit, Indian Statistical Institute, Calcutta 700 035, India

  • *Email address: tpas@mahendra.iacs.res.in
  • Email address: tpsc@mahendra.iacs.res.in
  • Email address: tpjc@mahendra.iacs.res.in
  • §Email address: bandyo@isical.ac.in

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Issue

Vol. 63, Iss. 5 — May 2001

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