Structural transitions in DNA driven by external force and torque

Abhijit Sarkar, Jean-Francois Léger, Didier Chatenay, and John F. Marko
Phys. Rev. E 63, 051903 – Published 12 April 2001
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Abstract

Experiments on single DNA molecules have shown that abrupt transitions between states of different extensions can be driven by stretching and twisting. Here we show how a simple statistical-mechanical model can be used to globally fit experimental force-extension data of Léger et al. [Phys. Rev. Lett. 83, 1066 (1999)], over a wide range of DNA molecule twisting. We obtain the mean twists, extensions, and free energies of the five DNA states found experimentally. We also predict global force-torque and force-linking number phase diagrams for DNA. At zero force, the unwinding torque for zero-force structural transition from the double helix to an unwound structure is found to be 2kBT, while the right-handed torque needed to drive DNA to a highly overwound state 7kBT.

  • Received 27 November 2000

DOI:https://doi.org/10.1103/PhysRevE.63.051903

©2001 American Physical Society

Authors & Affiliations

Abhijit Sarkar1, Jean-Francois Léger2, Didier Chatenay2, and John F. Marko1

  • 1Department of Physics, The University of Illinois at Chicago, 845 West Taylor Street, Chicago, Illinois 60607
  • 2LDFC, UMR CNRS 7506 and Université Louis Pasteur, Institute de Physique, 3 rue de l’Université, 67000 Strasbourg, France

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Issue

Vol. 63, Iss. 5 — May 2001

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