Energy-level statistics in the fine conformational resolution of RNA folding dynamics

Ariel Fernández, Teresita Burastero, Rodolfo Salthú, and Ana Tablar
Phys. Rev. E 60, 5888 – Published 1 November 1999

Abstract

This work is aimed at determining the energy-level statistics of the fine resolution of soft-mode dynamics warranting an adiabatically simplified structural relaxation of a folding biopolymer chain. The parameters defining the intrabasin structure relaxation are specified for RNA, so that each Watson-Crick base-pairing pattern may be treated as a quasiequilibrium ensemble of substates or torsional isomers within relevant folding time scales. The temperature-dependent threshold for energy dispersion associated with the fine structure of each superbasin is determined so as to warrant the adiabatic entrainment of the torsional dynamics.

  • Received 20 April 1999

DOI:https://doi.org/10.1103/PhysRevE.60.5888

©1999 American Physical Society

Authors & Affiliations

Ariel Fernández1,2,*, Teresita Burastero1, Rodolfo Salthú1, and Ana Tablar1

  • 1Instituto de Matemática, Universidad Nacional del Sur, Consejo Nacional de Investigaciones Científicas y Técnicas, Avenida Alem 1253, Bahía Blanca 8000, Argentina
  • 2Department of Chemistry and The James Franck Institute, The University of Chicago, Chicago, Illinois 60637

  • *Author to whom correspondence should be addressed.

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Vol. 60, Iss. 5 — November 1999

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