Statistical properties of contact maps

Michele Vendruscolo, Balakrishna Subramanian, Ido Kanter, Eytan Domany, and Joel Lebowitz
Phys. Rev. E 59, 977 – Published 1 January 1999
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Abstract

A contact map is a simple representation of the structure of proteins and other chainlike macromolecules. This representation is quite amenable to numerical studies of folding. We show that the number of contact maps corresponding to the possible configurations of a polypeptide chain of N amino acids, represented by (N1)-step self-avoiding walks on a lattice, grows exponentially with N for all dimensions D>1. We carry out exact enumerations in D=2 on the square and triangular lattices for walks of up to 20 steps and investigate various statistical properties of contact maps corresponding to such walks.. We also study the exact statistics of contact maps generated by walks on a ladder.

  • Received 24 August 1998

DOI:https://doi.org/10.1103/PhysRevE.59.977

©1999 American Physical Society

Authors & Affiliations

Michele Vendruscolo1, Balakrishna Subramanian2, Ido Kanter3, Eytan Domany1, and Joel Lebowitz2

  • 1Department of Physics of Complex Systems, Weizmann Institute of Science, Rehovot 76100, Israel
  • 2Department of Mathematics, Rutgers University, New Brunswick, New Jersey 08903
  • 3Department of Physics, Bar Ilan University, 52900 Ramat Gan, Israel

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Vol. 59, Iss. 1 — January 1999

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